========== 20170301: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. Seminar on SIF. ========== 20170302: 1. February report. 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 3. GMAO theme meeting 4. Aerosol-land interaction meeting ========== 20170303: 1. Sent the aerosol-land interaction meeting group members a few documents. 2. Emailed Huisheng inviting her to join the aerosol-land interaction meetings. 3. Processed GMAO GEOS5 seasonal forecast for March. 4. Talked to Eunjee about the regression p values. ========== 20170306: 1. The e0004s_preindustrialCO2 finished the 13th cycle. discover15:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l Y2016/M01 total 7354336 -rw-r--r-- 1 fzeng g0620 7547615847 2017-03-03 22:23 e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z discover15:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l ../../cat/ens_avg/Y2015/M12 total 526496 -rw-r--r-- 1 fzeng g0620 539112640 2017-03-03 22:23 e0004s_preindustrialCO2.ens_avg.ldas_tile_monthly_out.201512.bin Process the output (covert from tile-space to grid-space): ~/Catchment/SMAP_M09 > tile2grid_ease_spinup_monthly e0004s_preindustrialCO2 Check the output on GrADS. Looks good. cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/ mv e0004s_preindustrialCO2 e0004s_preindustrialCO2_13 cd e0004s_preindustrialCO2_13/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000/ /bin/rm -rf Y200[1-9] Y201[0-5] mkdir -p Y2001/M01 cd Y2001/M01 ln -s ../../Y2016/M01/e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20010101_0000z cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run Make sure that in M09_CN_e0004s_preindustrialCO2.exe: "restart_path = /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2_13/output/" "restart_id = e0004s_preindustrialCO2" Run ldsetup to set up the next cycle: cd /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/exec/e0004s_preindustrialCO2/Linux/bin source /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/g5_modules ./ldsetup setup /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09 /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_CN_e0004s_preindustrialCO2.exe /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_e0004s_preindustrialCO2.bat --runmodel --monthsperjob 10 --landmodel catchCN --submit Double-checked the executable and the restart file. They are both correct. 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170307: 1. Email from Sarith: "Rolf's version is now 1.90, he has added some new FP forcings for SMAP nature 4.1 etc So I updated my sandbox and pushed my tag too You can just from GEOSlana cvs upd -r 1.90 clsm_ensdrv_force_routines.F90" Update clsm_ensdrv_force_routines.F90 in both of my sandboxes /discover/nobackup/fzeng/clm4-to-clm4.5/LDAS/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/Components/GEOSlana_GridComp and /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/Components/GEOSlana_GridComp: (1) cp -p clsm_ensdrv_force_routines.F90 clsm_ensdrv_force_routines.F90.20170306 (2) cvs upd -r 1.90 clsm_ensdrv_force_routines.F90 Update the tag FZ_CLM4toCLM45, from /discover/nobackup/fzeng/clm4-to-clm4.5/LDAS/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/Components/GEOSlana_GridComp: cvs tag -F FZ_CLM4toCLM45 clsm_ensdrv_force_routines.F90 2. From /discover/nobackup/fzeng/clm4-to-clm4.5/LDAS/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src: cvs upd -r FZ_CLM4toCLM45 Applications/LDAS_App/GNUmakefile cvs upd -r FZ_CLM4toCLM45 Components/GEOSlana_GridComp/ens_driver_routines.F90 cvs upd -r FZ_CLM4toCLM45 Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/GNUmakefile_openmp /discover/nobackup/fzeng/clm4-to-clm4.5/LDAS/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src > ~ltakacs/cvstools/cvscmp FZ_CLM4toCLM45 The following files are locally MODIFIED: - Components/GEOSlana_GridComp/process_cn.F90 - Components/GEOSlana_GridComp/tile_coord.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNAllocationMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNAnnualUpdateMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNBalanceCheckMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNCStateUpdate1Mod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNCStateUpdate2Mod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNCStateUpdate3Mod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNDecompMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNEcosystemDynMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNFireMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNGRespMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNGapMortalityMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNMRespMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNNDynamicsMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNNStateUpdate1Mod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNNStateUpdate2Mod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNNStateUpdate3Mod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNPhenologyMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNPrecisionControlMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNSetValueMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNSummaryMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNVegStructUpdateMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNWoodProductsMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CN_DriverMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/clm_time_manager.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/clm_varcon.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/clm_varpar.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/clmtype.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/clmtypeInitMod.F90 - Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/pftvarcon.F90 The following files need to be UPDATED for tag FZ_CLM4toCLM45 |-------------|------------------------------------------------------------ | Newest | |-------------| File Name | Here | Tag | |------|------|------------------------------------------------------------ | - | x | Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNHarvestMod.F90 | - | x | Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CNiniTimeVar.F90 | - | x | Components/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/nanMod.F90 |------|------|------------------------------------------------------------ CNHarvestMod.F90, CNiniTimeVar.F90 and nanMod.F90 are no longer in CLM4.5, so no need to worry about that. ========== 20170308: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. Discussed with Eunjee about difference in global land area and global GPP between what we calculated and that in Jung's paper. ========== 20170309: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170310: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170313: 1. Updated higgins rain data through Mar 12, 2017. 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170314: 1. The e0004s_preindustrialCO2 finished the 14th cycle. discover15:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l Y2016/M01 total 7354336 -rw-r--r-- 1 fzeng g0620 7547615847 2017-03-13 10:28 e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z discover15:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l ../../cat/ens_avg/Y2015/M12 total 526496 -rw-r--r-- 1 fzeng g0620 539112640 2017-03-13 10:28 e0004s_preindustrialCO2.ens_avg.ldas_tile_monthly_out.201512.bin Process the output (covert from tile-space to grid-space): ~/Catchment/SMAP_M09 > tile2grid_ease_spinup_monthly e0004s_preindustrialCO2 Check the output on GrADS. Looks good. cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/ mv e0004s_preindustrialCO2 e0004s_preindustrialCO2_14 cd e0004s_preindustrialCO2_14/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000/ /bin/rm -rf Y200[1-9] Y201[0-5] mkdir -p Y2001/M01 cd Y2001/M01 ln -s ../../Y2016/M01/e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20010101_0000z cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run Make sure that in M09_CN_e0004s_preindustrialCO2.exe: "restart_path = /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2_14/output/" "restart_id = e0004s_preindustrialCO2" Run ldsetup to set up the next cycle: cd /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/exec/e0004s_preindustrialCO2/Linux/bin source /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/g5_modules ./ldsetup setup /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09 /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_CN_e0004s_preindustrialCO2.exe /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_e0004s_preindustrialCO2.bat --runmodel --monthsperjob 10 --landmodel catchCN --submit Double-checked the executable and the restart file. They are both correct. ========== 20170315-20170320: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170321: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. The e0004s_preindustrialCO2 finished the 15th cycle. discover17:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l Y2016/M01 total 7354336 -rw-r--r-- 1 fzeng g0620 7547615847 2017-03-21 12:28 e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z discover17:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l ../../cat/ens_avg/Y2015/M12 total 526496 -rw-r--r-- 1 fzeng g0620 539112640 2017-03-21 12:28 e0004s_preindustrialCO2.ens_avg.ldas_tile_monthly_out.201512.bin Process the output (covert from tile-space to grid-space): ~/Catchment/SMAP_M09 > tile2grid_ease_spinup_monthly e0004s_preindustrialCO2 Check the output on GrADS. Looks good. cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/ mv e0004s_preindustrialCO2 e0004s_preindustrialCO2_15 cd e0004s_preindustrialCO2_15/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000/ /bin/rm -rf Y200[1-9] Y201[0-5] mkdir -p Y2001/M01 cd Y2001/M01 ln -s ../../Y2016/M01/e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20010101_0000z cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run Make sure that in M09_CN_e0004s_preindustrialCO2.exe: "restart_path = /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2_15/output/" "restart_id = e0004s_preindustrialCO2" Run ldsetup to set up the next cycle: cd /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/exec/e0004s_preindustrialCO2/Linux/bin source /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/g5_modules ./ldsetup setup /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09 /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_CN_e0004s_preindustrialCO2.exe /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_e0004s_preindustrialCO2.bat --runmodel --monthsperjob 10 --landmodel catchCN --submit Double-checked the executable and the restart file. They are both correct. ========== 20170322: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. ========== 20170323: 1. Sarith created this new tag SM-CO2_2way_coupling to couple CO2 between land and the atmosphere. Files modified include: Applications/GEOSgcm_App/AGCM.rc.tmpl GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOS_PhysicsGridComp.F90 GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOS_SurfaceGridComp.F90 GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/GEOS_CatchCNGridComp.F90 GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/compute_rc.F90 (1) GEOS_PhysicsGridComp.F90: removed "if (DO_OBIO/=0) then" so that using CO2SC is the default. (2) GEOS_SurfaceGridComp.F90: (2.1) moved this block below outside of "if(DO_OBIO/=0) then" call MAPL_AddImportSpec(GC, & SHORT_NAME = 'CO2SC', & LONG_NAME = 'CO2 Surface Concentration Bin 001', & UNITS = '1e-6', & DIMS = MAPL_DimsHorzOnly, & VLOCATION = MAPL_VLocationNone, & RC=STATUS ) VERIFY_(STATUS) (2.2) moved this line below outside of "if(DO_OBIO/=0) then" call MAPL_GetPointer(IMPORT , CO2SC , 'CO2SC' , RC=STATUS); VERIFY_(STATUS) (2.3) moved this below outside of "if(DO_OBIO/=0) then" allocate(CO2SCTILE(NT), STAT=STATUS) VERIFY_(STATUS) and deleted "nullify( CO2SCTILE )" from "else" of this if block. (2.4) moved this line below outside of "if(DO_OBIO/=0) then" call MAPL_LocStreamTransform(LOCSTREAM, CO2SCTILE, CO2SC, RC=STATUS); VERIFY_(STATUS) (2.5) moved this line below outside of "if(DO_OBIO/=0) then" call FILLIN_TILE(GIM(type), 'CO2SC', CO2SCTILE, XFORM, RC=STATUS); VERIFY_(STATUS) (3) AGCM.rc.tmpl: added "USE_CO2SC: 0" (4) GEOS_CatchCNGridComp.F90: (4.1) added this block below to L378-385: call MAPL_AddImportSpec(GC, & SHORT_NAME = 'CO2SC', & LONG_NAME = 'CO2 Surface Concentration Bin 001', & UNITS = '1e-6', & DIMS = MAPL_DimsTileOnly, & VLOCATION = MAPL_VLocationNone, & RC=STATUS ) VERIFY_(STATUS) (4.2) added to L3762: real, dimension(:), pointer :: CO2SC (4.3) added to L4198: real, allocatable, dimension(:) :: CO2V (4.4) L4231: changed from "real :: co2" to "real :: co2, USE_CO2SC" (4.5) added after " call MAPL_GetPointer(IMPORT,BLW ,'BLW' ,RC=STATUS); VERIFY_(STATUS)": call MAPL_GetPointer(IMPORT,CO2SC ,'CO2SC' ,RC=STATUS); VERIFY_(STATUS) (4.6) added after "allocate(dayl_fac(ntiles) )": allocate(CO2V(ntiles) ) (4.7) added after "if(CO2 < 0.0) CO2 = GETCO2(AGCM_YY,dofyr)": CO2V(:) = CO2 ! use CO2SC from GOCART/CO2 ! ------------------------- call MAPL_GetResource(MAPL, USE_CO2SC, 'USE_CO2SC:', default=0., RC=STATUS) if (USE_CO2SC == 1) then where ((CO2SC >= 0.) .and. (CO2SC <= 1000.)) CO2V = CO2SC * 1e-6 end where endif (4.8) in call compute_rc, changed "co2" to "co2v" (4.9) after "call compute_rc": deallocate (co2v) 2. Updated a few files in my /discover/nobackup/fzeng/clm4-to-clm4.5/GEOS5/Heracles-5_4_p3-M3_V24_C05/ sandbox. /discover/nobackup/fzeng/clm4-to-clm4.5/GEOS5/Heracles-5_4_p3-M3_V24_C05/src > ~ltakacs/cvstools/cvscmp SM-CO2_2way_coupling The following files are locally MODIFIED: - GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CN_DriverMod.F90 - GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/clm_varpar.F90 - GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/pftvarcon.F90 - GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatch_GridComp/mk_restarts/GNUmakefile - GMAO_Shared/GEOS_Util/post/gcmpost.script The following files are CONFLICTING: - GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/GEOS_CatchCNGridComp.F90 - GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/compute_rc.F90 The following files need to be UPDATED for tag SM-CO2_2way_coupling |-------------|------------------------------------------------------------ | Newest | |-------------| File Name | Here | Tag | |------|------|------------------------------------------------------------ | | x | Applications/GEOSgcm_App/AGCM.rc.tmpl | | x | GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOS_PhysicsGridComp.F90 | | x | GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOS_SurfaceGridComp.F90 | | x | GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOS_LandGridComp.F90 | x | | GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/Shared/update_model_paras.F90 | | x | GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSlandice_GridComp/GEOS_LandIceGridComp.F90 | | x | GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/Shared/StieglitzSnow.F90 |------|------|------------------------------------------------------------ Updated these three that are not for CO2 coupling, from src: cvs upd -r SM-CO2_2way_coupling GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOS_LandGridComp.F90 cvs upd -r SM-CO2_2way_coupling GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/GEOSlandice_GridComp/GEOS_LandIceGridComp.F90 cvs upd -r SM-CO2_2way_coupling GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSsurface_GridComp/Shared/StieglitzSnow.F90 Wait until the coupling is successful before updating the other files that Sarith modified for the coupling. 3. Before the coupling, the CO2 value used is from src/GEOSgcs_GridComp/GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSradiation_GridComp/GEOS_RadiationShared/getco2.F90 ========== 20170324: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. Met with Eunjee about her coupling CO2 GEOS-5 runs and the manuscript. ========== 20170327: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. Updated higgins rain data through Mar 26, 2017. ========== 20170328: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170329: 1. Read Joanna's manuscript and provided comments. 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 3. Discussed with Eunjee about the photosynthesis equations in her manuscript. ========== 20170330: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170331: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. The e0004s_preindustrialCO2 finished the 16th cycle. discover18:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l Y2016/M01 total 7354336 -rw-r--r-- 1 fzeng g0620 7547615847 2017-03-28 11:36 e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z discover18:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l ../../cat/ens_avg/Y2015/M12 total 526496 -rw-r--r-- 1 fzeng g0620 539112640 2017-03-28 11:36 e0004s_preindustrialCO2.ens_avg.ldas_tile_monthly_out.201512.bin Process the output (covert from tile-space to grid-space): ~/Catchment/SMAP_M09 > tile2grid_ease_spinup_monthly e0004s_preindustrialCO2 Check the output on GrADS. Looks good. cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/ mv e0004s_preindustrialCO2 e0004s_preindustrialCO2_16 cd e0004s_preindustrialCO2_16/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000/ /bin/rm -rf Y200[1-9] Y201[0-5] mkdir -p Y2001/M01 cd Y2001/M01 ln -s ../../Y2016/M01/e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20010101_0000z cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run Make sure that in M09_CN_e0004s_preindustrialCO2.exe: "restart_path = /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2_16/output/" "restart_id = e0004s_preindustrialCO2" Run ldsetup to set up the next cycle: cd /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/exec/e0004s_preindustrialCO2/Linux/bin source /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/g5_modules ./ldsetup setup /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09 /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_CN_e0004s_preindustrialCO2.exe /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_e0004s_preindustrialCO2.bat --runmodel --monthsperjob 10 --landmodel catchCN --submit Double-checked the executable and the restart file. They are both correct.