========== 20170201: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170202: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. January report. 3. Noticed that my SMAP M09 run was terminated (same as my CLM4.5 test run). date_time_new 20041219_210730z get_forcing(): assuming GEOS-5 forcing data set get_GEOS_gfio_openfile(): Unsuccessfully tried to open files: ../input/met_forcing/MERRA2_land_forcing///MERRA2_300.tavg1_2d_rad_Nx.20041219.nc4 ../input/met_forcing/MERRA2_land_forcing///MERRA2_300/diag/Y2004/M12/MERRA2_300.tavg1_2d_rad_Nx.20041219.nc4 LDAS ERROR (3000) from get_GEOS: error opening file So it seems that the MERRA-2 data is not there anymore? Talked to Qing. She checked the files but they are there and are "rw-r-r". Don't know what happened. For the CLM4.5 test run, I simply re-submitted it. It passed the point where it stopped and is still running. Used edit_lenkf.csh to add "qsub lenkf.N+1.j" to the end of lenkf.N.j, then simply re-submitted lenkf.4.j where the run stopped. 4. Processed GMAO GEOS5 seasonal forecast for February. ========== 20170203: 1. Met with Eunjee to take a look at her manuscript. 2. Abhishek asked if I have a program to convert EASE 9km grids to regular lat-lon grids. Sent him two programs (created by Greg) that he can combine to generate a program for his purpose. 3. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170206: 1. Worked on /home/fzeng/Catchment/M2n5P_m0001/extract_tile_at_ECsite.f90 for Eunjee. ========== 20170207: OFF. ========== 20170208: 1. The e0004s_preindustrialCO2 finished the 10th cycle. discover18:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l Y2016/M01 total 7354336 -rw-r--r-- 1 fzeng g0620 7547615847 2017-02-08 08:20 e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z discover18:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l ../../cat/ens_avg/Y2015/M12 total 526496 -rw-r--r-- 1 fzeng g0620 539112640 2017-02-08 08:21 e0004s_preindustrialCO2.ens_avg.ldas_tile_monthly_out.201512.bin Process the output (covert from tile-space to grid-space): ~/Catchment/SMAP_M09 > tile2grid_ease_spinup_monthly e0004s_preindustrialCO2 Check the output on GrADS. Looks good. cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/ mv e0004s_preindustrialCO2 e0004s_preindustrialCO2_10 cd e0004s_preindustrialCO2_10/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000/ /bin/rm -rf Y200[1-9] Y201[0-5] mkdir -p Y2001/M01 cd Y2001/M01 ln -s ../../Y2016/M01/e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20010101_0000z cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run Make sure that in M09_CN_e0004s_preindustrialCO2.exe: "restart_path = /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2_10/output/" "restart_id = e0004s_preindustrialCO2" Run ldsetup to set up the next cycle: cd /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/exec/e0004s_preindustrialCO2/Linux/bin source /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/g5_modules ./ldsetup setup /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09 /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_CN_e0004s_preindustrialCO2.exe /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_e0004s_preindustrialCO2.bat --runmodel --monthsperjob 10 --landmodel catchCN --submit Double-checked the executable and the restart file. They are both correct. 2. Continued to work on /home/fzeng/Catchment/M2n5P_m0001/extract_tile_at_ECsite.f90 for Eunjee. Transferred the scripts to Eunjee and explained to her how they work. 3. Read Liu et al., 2016 paper to see if they used 3hrly CO2 data or coarser temporal resolution. ========== 20170209: 1. Continued to read Liu et al., 2016 paper to see if they used 3hrly CO2 data or coarser temporal resolution. 2. Discussed with Eunjee on what I found about the Liu et al. 2016 paper, and on the site-level comparisons. The site-level comparisons could be another paper. 3. Met with Sarith to check in the codes I modified. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 4. Edited the 1st draft of Eunjee's manuscript. ========== 20170210: 1. Continued to edit the 1st draft of Eunjee's manuscript. Returned to her with my revisions and comments. 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170213: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. Updated higgins rain data through Feb 12, 2017. ========== 20170214: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. Discussed with Sarith on the project using MODIS FPAR in Catchment-CN. ========== 20170215: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170216: 1. The e0004s_preindustrialCO2 finished the 11th cycle. /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l Y2016/M01 total 7354336 -rw-r--r-- 1 fzeng g0620 7547615847 2017-02-15 15:43 e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z dali10:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l ../../cat/ens_avg/Y2015/M12 total 526496 -rw-r--r-- 1 fzeng g0620 539112640 2017-02-15 15:43 e0004s_preindustrialCO2.ens_avg.ldas_tile_monthly_out.201512.bin Process the output (covert from tile-space to grid-space): ~/Catchment/SMAP_M09 > tile2grid_ease_spinup_monthly e0004s_preindustrialCO2 Check the output on GrADS. Looks good. Check the carbon convergence. Maybe it's good enough? Will ask Randy next week. cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/ mv e0004s_preindustrialCO2 e0004s_preindustrialCO2_11 cd e0004s_preindustrialCO2_11/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000/ /bin/rm -rf Y200[1-9] Y201[0-5] mkdir -p Y2001/M01 cd Y2001/M01 ln -s ../../Y2016/M01/e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20010101_0000z cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run Make sure that in M09_CN_e0004s_preindustrialCO2.exe: "restart_path = /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2_11/output/" "restart_id = e0004s_preindustrialCO2" Run ldsetup to set up the next cycle: cd /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/exec/e0004s_preindustrialCO2/Linux/bin source /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/g5_modules ./ldsetup setup /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09 /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_CN_e0004s_preindustrialCO2.exe /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_e0004s_preindustrialCO2.bat --runmodel --monthsperjob 10 --landmodel catchCN --submit Double-checked the executable and the restart file. They are both correct. 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 3. Met with Eunjee about Randy's comments on the manuscript. ========== 20170217: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. The e0004s_preindustrialCO2 stopped due to some file system issue on discover, when it was simulating Jan 2003. The issue was finally resolved around 5pm. Put it back to queue. Monitored it to make sure it runs correctly. ========== 20170221: 1. The e0004s_preindustrialCO2 stopped at "20091010_080730z" due to some filesystem issue on discover. date_time_new 20091010_080730z get_forcing(): assuming GEOS-5 forcing data set read SWGDN from ../input/met_forcing/MERRA2_land_forcing///MERRA2_300/diag/Y2009/M10/MERRA2_300.tavg1_2d_rad_Nx.20091010.nc4 GFIO_GetVar: error reading variable LDAS ERROR (3000) from get_GEOS: error reading gfio file qsub lenkf.10.j to put it back on the queue. ========== 20170222: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170223: 1. Talked to Randy about the carbon state convergence of e0004s_preindustrialCO2. Randy suggested to make it run about 200+ years total (right now 15*11=165 years). 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170224: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. The e0004s_preindustrialCO2 finished the 12th cycle. discover05:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l Y2016/M01 total 7354336 -rw-r--r-- 1 fzeng g0620 7547615847 2017-02-24 20:48 e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z discover05:/discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000 > ls -l ../../cat/ens_avg/Y2015/M12 total 526496 -rw-r--r-- 1 fzeng g0620 539112640 2017-02-24 20:48 e0004s_preindustrialCO2.ens_avg.ldas_tile_monthly_out.201512.bin Process the output (covert from tile-space to grid-space): ~/Catchment/SMAP_M09 > tile2grid_ease_spinup_monthly e0004s_preindustrialCO2 Check the output on GrADS. Looks good. Check the carbon convergence. Maybe it's good enough? Will ask Randy next week. cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/ mv e0004s_preindustrialCO2 e0004s_preindustrialCO2_12 cd e0004s_preindustrialCO2_12/output/SMAP_EASEv2_M09_GLOBAL/rs/ens0000/ /bin/rm -rf Y200[1-9] Y201[0-5] mkdir -p Y2001/M01 cd Y2001/M01 ln -s ../../Y2016/M01/e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20160101_0000z e0004s_preindustrialCO2.ens0000.catchcn_ldas_rst.20010101_0000z cd /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run Make sure that in M09_CN_e0004s_preindustrialCO2.exe: "restart_path = /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/e0004s_preindustrialCO2_12/output/" "restart_id = e0004s_preindustrialCO2" Run ldsetup to set up the next cycle: cd /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/exec/e0004s_preindustrialCO2/Linux/bin source /discover/nobackup/fzeng/LDASsa_m3-16_0_p2_CatchCatchCN_for_MERRA3/src/g5_modules ./ldsetup setup /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09 /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_CN_e0004s_preindustrialCO2.exe /discover/nobackup/fzeng/Catchment/SMAP_EASEv2_M09/run/M09_e0004s_preindustrialCO2.bat --runmodel --monthsperjob 10 --landmodel catchCN --submit Double-checked the executable and the restart file. They are both correct. ========== 20170227: 1. Updated higgins rain data through Feb 26, 2017. 2. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. ========== 20170228: 1. Worked on upgrading the CN model in Catchment-CN to CLM4.5. See notes /discover/nobackup/fzeng/clm4-to-clm4.5/notes_daily. 2. Met with Eunjee about the aerosol-land meeting on Thursday. Eunjee updated me the status of her manuscript.